# ------------------------------------------------
# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# ------------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "pgacmdr" in publications use:'
type: software
license: MIT
title: 'pgacmdr: Interactive Shiny Application for Population Genetics'
version: 0.1.0
doi: 10.32614/CRAN.package.pgacmdr
abstract: PGA-cmdr is an interactive 'shiny' application for population genetics analyses
  of multilocus individual genotype data from codominant markers (microsatellites,
  allozymes, SNPs). It covers data import and formatting, allele frequencies and missing
  data, observed and expected heterozygosity, F-statistics (FIS, FST, FIT) following
  Weir and Cockerham (1984) <https://doi.org/10.1111/j.1558-5646.1984.tb05657.x>,
  and gene diversities (HS, HT) following Nei and Chesser (1983) <https://doi.org/10.1111/j.1469-1809.1983.tb00993.x>.
  Analyses include local and global panmixia tests, population subdivision with a
  G-based test of genotypic differentiation, pairwise linkage disequilibrium tests,
  null allele frequency estimation with the ENA correction of Chapuis and Estoup (2007)
  <https://doi.org/10.1093/molbev/msl191>, and isolation by distance using the regression
  of Rousset (1997) <https://doi.org/10.1093/genetics/145.4.1219> and a Mantel test.
  Confidence intervals are obtained by bootstrap over individuals, sub-samples or
  loci, and p-values by Monte Carlo permutation, computed in parallel in C++ via 'Rcpp'
  and 'OpenMP'. All computations run locally and no data leave the user's computer.
authors:
- family-names: Kadiri
  given-names: Naffiou
  email: naffiou.kadiri@ird.fr
- family-names: Manzanilla
  given-names: Vincent
  email: vincent.manzanilla@ird.fr
- family-names: Meeûs
  given-names: Thierry
  name-particle: de
  email: thierry.demeeus@ird.fr
repository: https://kadnaf.r-universe.dev
repository-code: https://github.com/KadNaf/PGA-cmdr
commit: 31045c1cabdd0a519c3408ad1644b785de02eac9
url: https://github.com/KadNaf/PGA-cmdr
date-released: '2026-10-20'
contact:
- family-names: Kadiri
  given-names: Naffiou
  email: naffiou.kadiri@ird.fr