{ "_id": "6ad6fa04d556c3a3418a6425", "Package": "pgacmdr", "Title": "Interactive Shiny Application for Population Genetics", "Version": "0.1.0", "Authors@R": "c(\nperson(\"Naffiou\", \"Kadiri\",\nemail = \"naffiou.kadiri@ird.fr\",\nrole = c(\"aut\", \"cre\")),\nperson(\"Vincent\", \"Manzanilla\",\nemail = \"vincent.manzanilla@ird.fr\",\nrole = \"aut\"),\nperson(\"Thierry\", \"de Meeûs\",\nemail = \"thierry.demeeus@ird.fr\",\nrole = \"aut\"),\nperson(\"INTERTRYP, IRD, CIRAD\",\nrole = \"cph\")\n)", "BugReports": "https://github.com/KadNaf/PGA-cmdr/issues", "URL": "https://github.com/KadNaf/PGA-cmdr", "Description": "PGA-cmdr is an interactive 'shiny' application for\npopulation genetics analyses of multilocus individual genotype\ndata from codominant markers (microsatellites, allozymes,\nSNPs). It covers data import and formatting, allele frequencies\nand missing data, observed and expected heterozygosity,\nF-statistics (FIS, FST, FIT) following Weir and Cockerham\n(1984) , and gene\ndiversities (HS, HT) following Nei and Chesser (1983)\n. Analyses include\nlocal and global panmixia tests, population subdivision with a\nG-based test of genotypic differentiation, pairwise linkage\ndisequilibrium tests, null allele frequency estimation with the\nENA correction of Chapuis and Estoup (2007)\n, and isolation by distance using\nthe regression of Rousset (1997)\n and a Mantel test. Confidence\nintervals are obtained by bootstrap over individuals,\nsub-samples or loci, and p-values by Monte Carlo permutation,\ncomputed in parallel in C++ via 'Rcpp' and 'OpenMP'. All\ncomputations run locally and no data leave the user's computer.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "VignetteBuilder": "knitr", "SystemRequirements": "C++17, OpenMP", "Config/testthat/edition": "3", "Config/pak/sysreqs": "cmake libfontconfig1-dev libfreetype6-dev\nlibfribidi-dev make libharfbuzz-dev libicu-dev libpng-dev\nlibuv1-dev libxml2-dev xz-utils zlib1g-dev", "Repository": "https://kadnaf.r-universe.dev", "Date/Publication": "2026-10-20 01:48:47 UTC", "RemoteUrl": "https://github.com/KadNaf/PGA-cmdr", "RemoteRef": "HEAD", "RemoteSha": "31045c1cabdd0a519c3408ad1644b785de02eac9", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-10-20 05:12:25 UTC", "User": "root" }, "Author": "Naffiou Kadiri [aut, cre],\nVincent Manzanilla [aut],\nThierry de Meeûs [aut],\nINTERTRYP, IRD, CIRAD [cph]", "Maintainer": "Naffiou Kadiri ", "_user": "kadnaf", "_type": "src", "_file": "pgacmdr_0.1.0.tar.gz", 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